What \(E = mc^{2}\) says
Mass and energy are two measures of the same thing, linked by the factor \(c^{2}\). When a system gives out energy \(E\), its mass falls by \(\frac{E}{c^{2}}\). This happens in a chemical reaction too, but there the change is about one part in \(10^{10}\) and cannot be measured. In nuclear changes it is nearly one percent, and it can.
Three units of mass
Nuclear masses are given in kilograms, in unified atomic mass units (u), or in \(\mathrm{MeV} \,c^{-2}\). The last one makes the arithmetic disappear: a mass of \(1 \,\mathrm{u}\) is equivalent to \(931.5 \,\mathrm{MeV}\) of energy, so \(1 \,\mathrm{u} = 931.5 \,\mathrm{MeV} \,c^{-2}\). A proton has a mass of \(938 \,\mathrm{MeV} \,c^{-2}\).